CPGR BLAST Server
Javascript Tree Menu
Select type of BLAST Search
blastn
tblastn
tblastx
Search a nucleotide database using a nucleotide query
Enter Query Sequence
Enter DNA FASTA sequence:
or upload a file of DNA FASTA sequence:
Choose Databases to Search
Select the CPGR transcript assembly databases you would like to search:
- OR -
- All Plant Pathogen Sequences in GenBank
Submit BLAST Search
Search selected nucleotide databases using blastn
Optional BLAST Parameters
Expect Threshold:
1e-200
1e-100
1e-50
1e-20
1e-10
1e-5
1e-4
1e-3
1e-2
1e-1
1
10
100
1000
Max Number of Alignments:
1
5
10
20
50
100
250
500
Max Number of Descriptions:
1
5
10
20
50
100
250
500
Word Length:
7
11
15
Filter:
none
dust
View Filter:
no
yes
Matrix:
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Strand:
both
top
bottom
